Index _ | A | B | C | D | E | F | G | I | L | M | N | P | R | S | T _ __init__() (mialab.data.structure.BrainImage method) (mialab.filtering.feature_extraction.AtlasCoordinates method) (mialab.filtering.feature_extraction.NeighborhoodFeatureExtractor method) (mialab.filtering.postprocessing.ImagePostProcessing method) (mialab.filtering.preprocessing.ImageNormalization method) (mialab.filtering.preprocessing.ImageRegistration method) (mialab.filtering.preprocessing.ImageRegistrationParameters method) (mialab.filtering.preprocessing.SkullStripping method) (mialab.filtering.preprocessing.SkullStrippingParameters method) (mialab.utilities.file_access_utilities.BrainImageFilePathGenerator method) (mialab.utilities.file_access_utilities.DataDirectoryFilter method) (mialab.utilities.file_access_utilities.FileSystemDataCrawler method) (mialab.utilities.multi_processor.PicklableBrainImage method) (mialab.utilities.pipeline_utilities.FeatureExtractor method) A ATLAS_COORD (mialab.utilities.pipeline_utilities.FeatureImageTypes attribute) AtlasCoordinates (class in mialab.filtering.feature_extraction) B BrainImage (class in mialab.data.structure) BrainImageFilePathGenerator (class in mialab.utilities.file_access_utilities) BrainImageToPicklableBridge (class in mialab.utilities.multi_processor) BrainImageTypes (class in mialab.data.structure) BrainMask (mialab.data.structure.BrainImageTypes attribute) C convert() (mialab.utilities.multi_processor.BrainImageToPicklableBridge static method) (mialab.utilities.multi_processor.PicklableToBrainImageBridge static method) D DataDirectoryFilter (class in mialab.utilities.file_access_utilities) DefaultPickleHelper (class in mialab.utilities.multi_processor) DirectoryFilter (class in mialab.utilities.file_access_utilities) E execute() (mialab.filtering.feature_extraction.AtlasCoordinates method) (mialab.filtering.feature_extraction.NeighborhoodFeatureExtractor method) (mialab.filtering.postprocessing.ImagePostProcessing method) (mialab.filtering.preprocessing.ImageNormalization method) (mialab.filtering.preprocessing.ImageRegistration method) (mialab.filtering.preprocessing.SkullStripping method) (mialab.utilities.pipeline_utilities.FeatureExtractor method) F FeatureExtractor (class in mialab.utilities.pipeline_utilities) FeatureImageTypes (class in mialab.utilities.pipeline_utilities) FilePathGenerator (class in mialab.utilities.file_access_utilities) FileSystemDataCrawler (class in mialab.utilities.file_access_utilities) filter_directories() (mialab.utilities.file_access_utilities.DataDirectoryFilter static method) (mialab.utilities.file_access_utilities.DirectoryFilter static method) first_order_texture_features_function() (in module mialab.filtering.feature_extraction) G get_full_file_path() (mialab.utilities.file_access_utilities.BrainImageFilePathGenerator static method) (mialab.utilities.file_access_utilities.FilePathGenerator static method) get_mask() (mialab.filtering.feature_extraction.RandomizedTrainingMaskGenerator static method) get_sitk_transformation() (mialab.utilities.multi_processor.PicklableAffineTransform method) GroundTruth (mialab.data.structure.BrainImageTypes attribute) I ImageNormalization (class in mialab.filtering.preprocessing) ImagePostProcessing (class in mialab.filtering.postprocessing) ImageRegistration (class in mialab.filtering.preprocessing) ImageRegistrationParameters (class in mialab.filtering.preprocessing) init_evaluator() (in module mialab.utilities.pipeline_utilities) L load_atlas_images() (in module mialab.utilities.pipeline_utilities) M make_params_picklable() (mialab.utilities.multi_processor.DefaultPickleHelper method) (mialab.utilities.multi_processor.PostProcessingPickleHelper method) make_return_value_picklable() (mialab.utilities.multi_processor.DefaultPickleHelper method) (mialab.utilities.multi_processor.PostProcessingPickleHelper method) (mialab.utilities.multi_processor.PreProcessingPickleHelper method) mialab.data.structure module mialab.filtering.feature_extraction module mialab.filtering.postprocessing module mialab.filtering.preprocessing module mialab.utilities.file_access_utilities module mialab.utilities.multi_processor module mialab.utilities.pipeline_utilities module module mialab.data.structure mialab.filtering.feature_extraction mialab.filtering.postprocessing mialab.filtering.preprocessing mialab.utilities.file_access_utilities mialab.utilities.multi_processor mialab.utilities.pipeline_utilities MultiProcessor (class in mialab.utilities.multi_processor) N NeighborhoodFeatureExtractor (class in mialab.filtering.feature_extraction) P PicklableAffineTransform (class in mialab.utilities.multi_processor) PicklableBrainImage (class in mialab.utilities.multi_processor) PicklableToBrainImageBridge (class in mialab.utilities.multi_processor) post_process() (in module mialab.utilities.pipeline_utilities) post_process_batch() (in module mialab.utilities.pipeline_utilities) PostProcessingPickleHelper (class in mialab.utilities.multi_processor) pre_process() (in module mialab.utilities.pipeline_utilities) pre_process_batch() (in module mialab.utilities.pipeline_utilities) PreProcessingPickleHelper (class in mialab.utilities.multi_processor) R RandomizedTrainingMaskGenerator (class in mialab.filtering.feature_extraction) recover_params() (mialab.utilities.multi_processor.DefaultPickleHelper method) (mialab.utilities.multi_processor.PostProcessingPickleHelper method) recover_return_value() (mialab.utilities.multi_processor.DefaultPickleHelper method) (mialab.utilities.multi_processor.PostProcessingPickleHelper method) (mialab.utilities.multi_processor.PreProcessingPickleHelper method) RegistrationTransform (mialab.data.structure.BrainImageTypes attribute) run() (mialab.utilities.multi_processor.MultiProcessor static method) S SkullStripping (class in mialab.filtering.preprocessing) SkullStrippingParameters (class in mialab.filtering.preprocessing) T T1w (mialab.data.structure.BrainImageTypes attribute) T1w_GRADIENT_INTENSITY (mialab.utilities.pipeline_utilities.FeatureImageTypes attribute) T1w_INTENSITY (mialab.utilities.pipeline_utilities.FeatureImageTypes attribute) T2w (mialab.data.structure.BrainImageTypes attribute) T2w_GRADIENT_INTENSITY (mialab.utilities.pipeline_utilities.FeatureImageTypes attribute) T2w_INTENSITY (mialab.utilities.pipeline_utilities.FeatureImageTypes attribute)